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I came across this paper: https://arxiv.org/abs/0902.1750
and the authors mention "This article is meant to be the first one in the sequel within a program, initiated by the authors, of classifying topoi of higher order structures in topology," but I could not readily find subsequent papers. Did the project get merged into some other one with a less obvious name?
Looks unlikely that it was continued. Bakovic had no ArXiv posts from then until just this year; if he left math for a while, that would be a good explanation of the project being dropped.
knowing Igor, it is more likely that the "subsequent papers" form a 450 pages draft in his laptop, rigorously written without backup.
Email him [I will send you a DM]: he's generous, a sharp mathematician, and very excited to talk about his ideas with others.
@Kevin Carlson yes, @Igor Bakovic did indeed leave mathematics, temporarily.
To survive?
I am still trying to survive… but I returned to mathematics for good, until I breathe…
Good luck!
Thank you John, I will need it. You probably saw my talk at the first Transactions in Category Theory conference in June where you have been a keynote speaker.